Showing posts with label SitRep. Show all posts
Showing posts with label SitRep. Show all posts

Saturday, 7 May 2016

Brazil's microcephaly and CNS disorder (M&CD) monitoring: Report No. 24, 2016-Week No. 17...

These graphs are made by me using data obtained from epidemiological week (EW) number 17's Brazil Ministry of Health microcephaly and foetal and infant microcephaly and central nervous system (CNS) disorders (M&CD) report.[1]

Brazil reports a total of 120,161 suspected Zika virus detections this EW.[1] Around one thousand of these have been laboratory confirmed.

Suspected M&CD cases...

The total number of suspected M&CD cases increased by 115 to 7,343 this EW.


The graph above shows the number of suspected M&CD diagnoses in Brazil up to 30-April-2016. The cumulative curve (yellow dots; left hand axis) is growing, but slowly. 

This was another slower weekly rise (orange bars; right-hand axis). These bars are based on the difference in total suspected cases reported this EW compared to that reported in the last EW. This method may not reflect the diagnoses that occurred during the past EW (some may have come from days or weeks earlier), but that level of detail is not available in the MOH report.

Confirmed and discarded M&CD diagnoses...

M&CD cases under investigation decreased by 130 to 3,580 this week - the sixth consecutive decrease. This may be occurring for a range of (guessed) reasons including:

  1. improved capacity to address a large volume of request for clinical classification of suspect diagnoses.
  2. streamlining the confirmation processes
  3. retrospective application of changed head circumference definitions resulting in reductions to the number of the microcephaly diagnoses.
    This aspect will not reduce the number of cases with structural brain changes that occur in the absence of a decreased head size - which are reportedly also related to Zika virus and/or other causal influences.
    There is time involved in making these diagnoses because of the need for detailed ultrasound and other diagnostic investigations to identify congenital infection outcomes including intracranial calcifications, dilation of cerebral ventricles or posterior fossa changes and other issues.

In the graph above, we can see that 172 (blue bars; right hand axis) suspected M&CD diagnoses were discarded upon closer investigation with a current total of 2,492 removed.

The rate of these resolved diagnoses (line with blue dots, left-hand axis) continues to outpace the rate of the smaller overall number of confirmed M&CD diagnoses (red dots, left-hand axis). 


As of this EW, 17% of suspected M&CD diagnoses have been confirmed while 34% of suspected diagnoses have been discarded. 


The cumulative number of M&CD diagnoses does continue its climb this EW, growing by 73 new diagnoses (red bars; right-hand axis) to total 1,271


The number of these M&CD diagnoses to be confirmed with a Zika virus infection also grows (green dots; left-hand axis) by 9 new detections to 203 this EW (green bars; right-hand axis). Those confirmed Zika virus infections represent 16% of all confirmed M&CD diagnoses and 3% of all suspect diagnoses - but these are not fair comparisons for a range of reasons I won't go on about here.


References...

  1. http://portalsaude.saude.gov.br/images/pdf/2016/maio/04/coes-microcefalia-informe-epi-24-se17-2016.pdf

Wednesday, 28 January 2015

Are fewer Ebola virus disease cases being confirmed than previously?

A very quick graph plotting the proportion (percentage, %) of laboratory-confirmed Ebola virus disease (EVD) cases reported by the WHO over time. That is, the of samples taken from clinically suspected EVD cases that are RT-PCR positive for Ebola virus in a given report, divided by the total number of suspected + probable + confirmed cases in that report.

Taken from my static
EVD tallies and graphs
page here
. Updated
28JAN2015 AEST.
Click on graph to enlarge. 
Looking at the graph below, it seems like a lower proportion of total cases are being confirmed now compared to before the total case load began decreasing (especially from December onwards-see adjacent graphic). 

Presumably this is due to the larger number of other infectious diseases in the region that cause signs and symptoms, especially early signs and symptoms, that cannot be easily clinically differentiated from EVD; more suspect cases that don't test positive for EVD than before.

When considered in the context of the now smaller number of EVD cases overall, the non-EVD infection's background "noise" has become louder.

But the bottom line is that EVD cases are steadily declining thanks to the many efforts of many people and the changes to habits, traditions and practices that increased risky contact.

The proportion (%) of EVD detection that are laboratory confirmed at each World Health Organization Situation Report or Situation Summary. Anomalous values have been removed. Click on graph to enlarge.