Showing posts with label France. Show all posts
Showing posts with label France. Show all posts

Thursday, 12 June 2014

MERS-CoV in the blood....

The Middle East respiratory syndrome coronavirus (MERS-CoV) is, at its core, a respiratory virus. Well, as far as we know it is anyway. But, like other respiratory viruses (see an earlier post on rhinoviruses), MERS-CoV can be detected in the blood....a so-called "viraemia". In some cases this is identified in other virus infections in parallel with the viral load being generally high, perhaps indicating that virus is replicating beyond the body's ability to contain and control it at the site of initial replication. 

Perhaps, and MERS-CoV may be a good example of this, so-called extra-respiratory spread of a respiratory virus occurs when it has a penchant for blood vessel cells (they present its receptor in their surface, or have something in their cellular machinery that aids virus replication) or some other ability to specifically get beyond the respiratory tract. 

However it occurs, the result is a much wider spread of the virus around the body; blood being something that is widely traveled! We already know that MERS-CoV has a love for growing in kidney cells so extra-respiratory spread may create a perfect storm for delivering this little bomb to a site where it can create even more havoc than in our airways. If those kidneys are already a bit bashed about, say by diabetes, then the blast radius is perhaps increased that much more.

A new paper just out in Emerging Infectious Diseases [1] is the latest to highlight viraemia, or pedantically because its viral RNA in the blood, RNAemia and its role in detection of MERS-CoV.

A lower respiratory tract (LRT) sample (bronchoalveolar lavage; BAL) was collected from a 66-year old man (66M) who returned to Tunisia after after a 5-week visit (20-March to 28-April) with his daughter in Qatar, interspersed with a pilgrimage to Mecca (Makkah; 27-March to 04-April) in the Kingdom of Saudi Arabia (KSA). 

66M arrived back in Tunisia 28-April with an acute respiratory illness which progressed and from which the LRT sample was collected. A subsequent X-Ray identified cellular infiltrates in his lungs. His 30-year old daughter (30F) stayed in Qatar. His 34-year old son (34M), a nurse, cared for him both at home and later in the intensive care unit as his disease progressed, eventually ending in his death from multi-organ failure. He was buried 13-May and his daughter returned from Qatar for the funeral. 66M's LRT sample was not positive for MERS-CoV and he had no other respiratory viruses (not detected using PCR testing which may have been more appropriate). His daughter and son were positive for MERS-CoV so 66M was described as a "probable" case (travel, signs & symptoms, and at least subsequent contact with MERS-CoV cases). The incubation period for his illness placed 66M in Qatar at the likely time of acquisition of virus and his son was likely to have acquired his infection from his father in Tunisia. The daughter may have acquired the virus from her father while he was in Qatar or from a related source in Qatar (but seems to have been a Qatar-related acquisition of some sort). 66M's wife, 2 other well children and his son's wife were not MERS-CoV positive 5-weeks later (but then they were unlikely to have tested positive so far out from the event). 

Afterwards the US CDC tested a serum sample (tested 5-August-2013, blood taken 9-May-2013) by reverse transcription real-time polymerase chain reaction (RT-rtPCR), and it was positive. Thus - the cluster is resolved. Got a better appreciation for the amount of work that goes into tracking this stuff down in detail?

But this was not the first time a MERS-CoV diagnosis was obtained retrospectively, or as part of a study, using RT-PCR (conventional or real-time) on serum (cell free blood) rather than a respiratory tract sample. Yet remember that the presence of viral genome (or bits thereof) identified by RT-PCR does not guarantee that infectious virus was in the blood, only that viral RNA could be detected there.
  • Case No. 1 from the original hospital cluster of MERS cases in Al-Zarqa, Jordan in March-May 2012, was identified thanks to retrospective RT-rtPCR (CDC version) on a convalescent serum sample.[2] 
  • The 2 French MERS cases (1 imported, 1 locally acquired from contact) had RNA in their blood (UpE RT-rtPCR); the patient who died was positive for at least 4-weeks while the surviving patient cleared viral RNA in the 1st week after symptom onset.[3] 
  • Two cases imported into the Netherlands from the KSA were found to have viral RNA in their blood for days; Case #1 from day-0 after diagnosis until at least day-9 and Case #2 from day-1 until at least day-5.[4] In this study viraemia outlasted virus detectability in the faeces but was detected for as long as virus in throat swabs of Case #1. RNA was not detected in the urine.[4]
Serum may be a useful sample, not just to determine whether antibodies to MERS-CoV develop(ed), but to help detect MERS-CoV RNA, as a surrogate for infectious virus, when a respiratory sample is not available. 

The finding of MERS-CoV RNA in the blood so frequently, among those studies that have looked, may also indicate it is a useful marker of disease severity as seen in the French cases. Serum is already a sample recommended for collection for antibody studies.[5] Let's see if these papers can trigger a little more looking back at those samples, which are hopefully stored in freezers somewhere. 

Anything that helps nail down "probable" cases and better define the pathogenesis of MERS-CoV is a good thing. 

Some typos & grammar corrected 05MAR2015

References.... 

  1. Family Cluster of Middle East Respiratory Syndrome Coronavirus Infections, Tunisia, 2013 http://wwwnc.cdc.gov/eid/article/20/9/14-0378_article.htm
  2. Novel coronavirus infections in Jordan, April 2012: epidemiological findings from a retrospective investigation
    http://applications.emro.who.int/emhj/v19/Supp1/EMHJ_2013_19_Supp1_S12_S18.pdf
  3. Distinct Immune Response in Two MERS-CoV-Infected Patients: Can We Go from Bench to Bedside?
    http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0088716
  4. Middle East respiratory syndrome coronavirus (MERS-CoV) infections in two returning travellers in the Netherlands, May 2014
    http://www.eurosurveillance.org/images/dynamic/EE/V19N21/art20817.pdf
  5. http://who.int/csr/disease/coronavirus_infections/MERS_Lab_recos_16_Sept_2013.pdf?ua=1

Wednesday, 30 October 2013

French "probable" case pas vraiment so probable after all

FluTracker's and Mike Coston is busy keeping us up-to-date on the latest with MERS-CoV concerns around the world post-Hajj.

Last night's probable case has tested negative for the MERS-CoV according to media - the Health Ministry website has not released this yet.

The surviving case of MERS-CoV in France, is still hospitalized.

Wednesday, 21 August 2013

2nd French MERS-CoV patient still in serious condition

1st sources: @makoto_au_japon & @HelenBranswell

Nord Pas-de-Calais reports that the patient remains in intensive care in serious condition. He is not in isolation as he is MERS-CoV free.

The 51-year-old male (51M) patient was locally infected, showing signs on May 8th 2013. He was believed to have been infected after sharing a 20m2 room and single bathroom, with the MERS-CoV index case, 64M from the United Arab Emirates. 

51M was admitted to hospital in Lille May 9th. He has been there for 104 days or 3-months and 12 days.

The index case died May 28th.

Monday, 17 June 2013

MERS-CoV infection control: the French connection.

A Eurosurveillance article by Mailles and colleagues describes the procedures used to lock down spread of MERS-CoV once confirmed.

Confirmed cases were isolated in negative pressure rooms (they suck air in, instead of pushing air out of a room as usually occurs in an air-conditioned room, ensuring virus-laden particles cannot escape) with dedicated staff using contact and aerosol precautions (e.g. personal protective gear which may have included back fastening gowns, disposable gloves, filtering masks, glasses etc).

A close contact was asked not to return to work and to wear a surgical mask when with other people. Other close contacts had to carry a ask and do nit if they developed symptoms, but could otherwise continue with life as usual.

Airborne transmission was strongly suspected but other routes, including the possible contamination of surfaces from the stools of the index case who initially presented with diarrhoea.

Wednesday, 29 May 2013

Imported French MERS case dies.

Reuters reports that the 65M who contracted MERS-CoV while travelling in Dubai has died. 

He shared a room with a 50M who subsequently contracted the virus and remains in hospital. With the new case above, the case fatality rate sits to 47%.

Wednesday, 8 May 2013

Le MERS-CoV arrives in France.

A French citizen has been isolated in an intensive care unit somewhere in Paris after returning to France from the United Arab Emirates. 

The health website of the Ministry of Social Affairs and Health (Le site santé di Ministère des Affaires sociales et de la Santé) cites the National Reference Center at the Institute Pasteur as having confirmed the MERS-CoV (HCoV-EMC) case. 

This is not the Kingdom of Saudi Arabia (KSA) for the geographically challenged among us (I've added a map to the MERS-CoV page), so the virus is active in at least two sites unless this case visited KSA as well.